Alpha-L-Arabinose
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Identification
- Generic Name
- Alpha-L-Arabinose
- DrugBank Accession Number
- DB03142
- Background
Not Available
- Type
- Small Molecule
- Groups
- Experimental
- Structure
- Weight
- Average: 150.1299
Monoisotopic: 150.05282343 - Chemical Formula
- C5H10O5
- Synonyms
- Not Available
Pharmacology
- Indication
Not Available
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- Pharmacodynamics
Not Available
- Mechanism of action
Target Actions Organism UL-arabinose-binding periplasmic protein Not Available Escherichia coli (strain K12) UArabinose operon regulatory protein Not Available Escherichia coli (strain K12) UAldose 1-epimerase Not Available Lactococcus lactis - Absorption
Not Available
- Volume of distribution
Not Available
- Protein binding
Not Available
- Metabolism
- Not Available
- Route of elimination
Not Available
- Half-life
Not Available
- Clearance
Not Available
- Adverse Effects
- Improve decision support & research outcomesWith structured adverse effects data, including: blackbox warnings, adverse reactions, warning & precautions, & incidence rates. View sample adverse effects data in our new Data Library!Improve decision support & research outcomes with our structured adverse effects data.
- Toxicity
Not Available
- Pathways
- Not Available
- Pharmacogenomic Effects/ADRs
- Not Available
Interactions
- Drug Interactions
- This information should not be interpreted without the help of a healthcare provider. If you believe you are experiencing an interaction, contact a healthcare provider immediately. The absence of an interaction does not necessarily mean no interactions exist.Not Available
- Food Interactions
- Not Available
Categories
- Drug Categories
- Not Available
- Chemical TaxonomyProvided by Classyfire
- Description
- This compound belongs to the class of organic compounds known as pentoses. These are monosaccharides in which the carbohydrate moiety contains five carbon atoms.
- Kingdom
- Organic compounds
- Super Class
- Organic oxygen compounds
- Class
- Organooxygen compounds
- Sub Class
- Carbohydrates and carbohydrate conjugates
- Direct Parent
- Pentoses
- Alternative Parents
- Tetrahydrofurans / Secondary alcohols / Hemiacetals / Polyols / Oxacyclic compounds / Primary alcohols / Hydrocarbon derivatives
- Substituents
- Alcohol / Aliphatic heteromonocyclic compound / Hemiacetal / Hydrocarbon derivative / Organoheterocyclic compound / Oxacycle / Pentose monosaccharide / Polyol / Primary alcohol / Secondary alcohol
- Molecular Framework
- Aliphatic heteromonocyclic compounds
- External Descriptors
- L-arabinofuranose (CHEBI:28772)
- Affected organisms
- Not Available
Chemical Identifiers
- UNII
- R0L7IU6KYJ
- CAS number
- Not Available
- InChI Key
- HMFHBZSHGGEWLO-QMKXCQHVSA-N
- InChI
- InChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4+,5+/m0/s1
- IUPAC Name
- (2R,3R,4R,5S)-5-(hydroxymethyl)oxolane-2,3,4-triol
- SMILES
- OC[C@@H]1O[C@@H](O)[C@H](O)[C@H]1O
References
- General References
- Not Available
- External Links
- PDB Entries
- 1gye / 1pz2 / 1qw8 / 1ur1 / 1ur2 / 1v6u / 1v6v / 1wd4 / 2bnj / 2c7f … show 51 more
Clinical Trials
Pharmacoeconomics
- Manufacturers
- Not Available
- Packagers
- Not Available
- Dosage Forms
- Not Available
- Prices
- Not Available
- Patents
- Not Available
Properties
- State
- Solid
- Experimental Properties
- Not Available
- Predicted Properties
Property Value Source Water Solubility 1070.0 mg/mL ALOGPS logP -2.6 ALOGPS logP -2.3 Chemaxon logS 0.85 ALOGPS pKa (Strongest Acidic) 11.31 Chemaxon pKa (Strongest Basic) -3 Chemaxon Physiological Charge 0 Chemaxon Hydrogen Acceptor Count 5 Chemaxon Hydrogen Donor Count 4 Chemaxon Polar Surface Area 90.15 Å2 Chemaxon Rotatable Bond Count 1 Chemaxon Refractivity 29.96 m3·mol-1 Chemaxon Polarizability 13.49 Å3 Chemaxon Number of Rings 1 Chemaxon Bioavailability 1 Chemaxon Rule of Five Yes Chemaxon Ghose Filter No Chemaxon Veber's Rule No Chemaxon MDDR-like Rule No Chemaxon - Predicted ADMET Features
Property Value Probability Human Intestinal Absorption - 0.5 Blood Brain Barrier + 0.858 Caco-2 permeable - 0.8468 P-glycoprotein substrate Non-substrate 0.7353 P-glycoprotein inhibitor I Non-inhibitor 0.941 P-glycoprotein inhibitor II Non-inhibitor 0.9817 Renal organic cation transporter Non-inhibitor 0.8808 CYP450 2C9 substrate Non-substrate 0.8352 CYP450 2D6 substrate Non-substrate 0.8642 CYP450 3A4 substrate Non-substrate 0.6705 CYP450 1A2 substrate Non-inhibitor 0.9237 CYP450 2C9 inhibitor Non-inhibitor 0.9467 CYP450 2D6 inhibitor Non-inhibitor 0.9607 CYP450 2C19 inhibitor Non-inhibitor 0.9406 CYP450 3A4 inhibitor Non-inhibitor 0.973 CYP450 inhibitory promiscuity Low CYP Inhibitory Promiscuity 0.9404 Ames test Non AMES toxic 0.8567 Carcinogenicity Non-carcinogens 0.949 Biodegradation Ready biodegradable 0.9415 Rat acute toxicity 0.9608 LD50, mol/kg Not applicable hERG inhibition (predictor I) Weak inhibitor 0.9678 hERG inhibition (predictor II) Non-inhibitor 0.9447
Spectra
- Mass Spec (NIST)
- Not Available
- Spectra
Spectrum Spectrum Type Splash Key Predicted GC-MS Spectrum - GC-MS Predicted GC-MS splash10-05cu-9300000000-e24e80da64b2475ddfd8 Predicted MS/MS Spectrum - 10V, Positive (Annotated) Predicted LC-MS/MS splash10-0159-1900000000-65966b208d81ea756a54 Predicted MS/MS Spectrum - 10V, Negative (Annotated) Predicted LC-MS/MS splash10-06si-3900000000-3fe655e85145d0d279a4 Predicted MS/MS Spectrum - 20V, Positive (Annotated) Predicted LC-MS/MS splash10-07ru-9200000000-a7921eb3c70bc6587187 Predicted MS/MS Spectrum - 20V, Negative (Annotated) Predicted LC-MS/MS splash10-0a4i-9000000000-94cff2235252fdcc733b Predicted MS/MS Spectrum - 40V, Positive (Annotated) Predicted LC-MS/MS splash10-0a4i-9000000000-d9f5941c1c178ee0e4c2 Predicted MS/MS Spectrum - 40V, Negative (Annotated) Predicted LC-MS/MS splash10-0006-9000000000-2059c8dc4a09eab695bd Predicted 1H NMR Spectrum 1D NMR Not Applicable Predicted 13C NMR Spectrum 1D NMR Not Applicable - Chromatographic Properties
Collision Cross Sections (CCS)
Adduct CCS Value (Å2) Source type Source [M-H]- 128.3944907 predictedDarkChem Lite v0.1.0 [M-H]- 131.69337 predictedDeepCCS 1.0 (2019) [M+H]+ 130.2248907 predictedDarkChem Lite v0.1.0 [M+H]+ 134.0124 predictedDeepCCS 1.0 (2019) [M+Na]+ 129.2809907 predictedDarkChem Lite v0.1.0 [M+Na]+ 140.2993 predictedDeepCCS 1.0 (2019)
Targets
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1. DetailsL-arabinose-binding periplasmic protein
- Kind
- Protein
- Organism
- Escherichia coli (strain K12)
- Pharmacological action
- Unknown
- General Function
- Monosaccharide-transporting atpase activity
- Specific Function
- Involved in the high-affinity L-arabinose membrane transport system. Binds with high affinity to arabinose, but can also bind D-galactose (approximately 2-fold reduction) and D-fucose (approximatel...
- Gene Name
- araF
- Uniprot ID
- P02924
- Uniprot Name
- L-arabinose-binding periplasmic protein
- Molecular Weight
- 35540.67 Da
References
2. DetailsArabinose operon regulatory protein
- Kind
- Protein
- Organism
- Escherichia coli (strain K12)
- Pharmacological action
- Unknown
- General Function
- Transcription factor activity, sequence-specific dna binding
- Specific Function
- This protein controls the expression of at least six genes that are involved in the transport and catabolism of L-arabinose. It regulates initiation of transcription of the araBAD operon and it als...
- Gene Name
- araC
- Uniprot ID
- P0A9E0
- Uniprot Name
- Arabinose operon regulatory protein
- Molecular Weight
- 33383.625 Da
References
3. DetailsAldose 1-epimerase
- Kind
- Protein
- Organism
- Lactococcus lactis
- Pharmacological action
- Unknown
- General Function
- Carbohydrate binding
- Specific Function
- Converts alpha-aldose to the beta-anomer.
- Gene Name
- galM
- Uniprot ID
- Q9ZB17
- Uniprot Name
- Aldose 1-epimerase
- Molecular Weight
- 37610.85 Da
Drug created at June 13, 2005 13:24 / Updated at June 12, 2020 16:52