A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map.

Article Details

Citation

Oshima T, Aiba H, Baba T, Fujita K, Hayashi K, Honjo A, Ikemoto K, Inada T, Itoh T, Kajihara M, Kanai K, Kashimoto K, Kimura S, Kitagawa M, Makino K, Masuda S, Miki T, Mizobuchi K, Mori H, Motomura K, Nakamura Y, Nashimoto H, Nishio Y, Saito N, Horiuchi T, et al.

A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map.

DNA Res. 1996 Jun 30;3(3):137-55.

PubMed ID
8905232 [ View in PubMed
]
Abstract

The 718,122 base pair sequence of the Escherichia coli K-12 genome corresponding to the region from 12.7 to 28.0 minutes on the genetic map is described. This region contains at least 681 potential open reading frames, of which 277 (41%) have been previously identified, 147 (22%) are homologous to other known genes, 139 (20%) are identical or similar to the hypothetical genes registered in databases, and the remaining 118 (17%) do not show a significant similarity to any other gene. In this region, we assigned a cluster of cit genes encoding multienzyme citrate lyase, two clusters of fimbrial genes and a set of lysogenic phage genes encoding integrase, excisionase and repressor in the e14 genetic element. In addition, a new valine tRNA gene, designated valZ, and a family of long directly repeated sequences, LDR-A, -B and -C, were found.

DrugBank Data that Cites this Article

Polypeptides
NameUniProt ID
3-oxoacyl-[acyl-carrier-protein] synthase 3P0A6R0Details
Oxygen-insensitive NADPH nitroreductaseP17117Details
Pyruvate dehydrogenase [ubiquinone]P07003Details
3-oxoacyl-[acyl-carrier-protein] synthase 2P0AAI5Details
[Citrate [pro-3S]-lyase] ligaseP77390Details
Aspartate aminotransferaseP00509Details
Isocitrate dehydrogenase [NADP]P08200Details
Putrescine-binding periplasmic proteinP31133Details
3-phosphoshikimate 1-carboxyvinyltransferaseP0A6D3Details
Galactose-1-phosphate uridylyltransferaseP09148Details
DihydroorotaseP05020Details
Dihydroorotate dehydrogenase (quinone)P0A7E1Details
Outer membrane protein FP02931Details
Protein YceIP0A8X2Details
Cytidylate kinaseP0A6I0Details
Oxygen-insensitive NAD(P)H nitroreductaseP38489Details
Glucosamine-6-phosphate deaminaseP0A759Details
Sugar phosphatase YbiVP75792Details
Glucose-1-phosphataseP19926Details
Formate acetyltransferase 1P09373Details
Bifunctional protein PutAP09546Details
UDP-glucose 4-epimeraseP09147Details
Lipid A palmitoyltransferase PagPP37001Details
Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitiveP0AB91Details
Spermidine/putrescine-binding periplasmic proteinP0AFK9Details
Outer membrane protein AP0A910Details
Outer membrane protein XP0A917Details
Release factor glutamine methyltransferaseP0ACC1Details
D-alanyl-D-alanine carboxypeptidase DacAP0AEB2Details
Thioredoxin reductaseP0A9P4Details
3-oxoacyl-[acyl-carrier-protein] reductase FabGP0AEK2Details
Probable phosphatase YcdXP75914Details
Molybdopterin synthase catalytic subunitP30749Details
Deoxyribodipyrimidine photo-lyaseP00914Details
Alkyl hydroperoxide reductase subunit FP35340Details
Flavodoxin-1P61949Details
Aminodeoxychorismate lyaseP28305Details
O-acetyl-ADP-ribose deacetylaseP0A8D6Details
Sensor protein PhoQP23837Details
Potassium-transporting ATPase ATP-binding subunitP03960Details
Succinate dehydrogenase flavoprotein subunitP0AC41Details
Penicillin-binding protein 2P0AD65Details
D-alanyl-D-alanine carboxypeptidase DacCP08506Details
Respiratory nitrate reductase 1 alpha chainP09152Details
Respiratory nitrate reductase 1 beta chainP11349Details
Respiratory nitrate reductase 1 gamma chainP11350Details
Aquaporin ZP60844Details
Succinate dehydrogenase iron-sulfur subunitP07014Details
Succinate dehydrogenase cytochrome b556 subunitP69054Details
Succinate dehydrogenase hydrophobic membrane anchor subunitP0AC44Details
3-hydroxydecanoyl-[acyl-carrier-protein] dehydrataseP0A6Q3Details
Acyl carrier proteinP0A6A8Details
Fatty acid metabolism regulator proteinP0A8V6Details
Outer-membrane lipoprotein LolBP61320Details
Leucyl/phenylalanyl-tRNA--protein transferaseP0A8P1Details
Aminopeptidase NP04825Details
Disulfide bond formation protein BP0A6M2Details
Catecholate siderophore receptor FiuP75780Details