Ribosomal RNA small subunit methyltransferase F

Details

Name
Ribosomal RNA small subunit methyltransferase F
Synonyms
  • 2.1.1.-
  • rRNA (cytosine-C(5)-)-methyltransferase RsmF
Gene Name
rsmF
Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Amino acid sequence
>lcl|BSEQ0017299|Ribosomal RNA small subunit methyltransferase F
MLPKAFLSRMAELLGEEFPAFLKALTEGKRTYGLRVNTLKLPPEAFQRISPWPLRPIPWC
QEGFYYPEEARPGPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLA
ARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAPC
SGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGV
VAHFLKAHPEFRLEDARLHPLFAPGVPEWGEGNPELLKTARLWPHRLEGEGHFLARFRKE
GGAWSTPRLERPSPLSQEALRAFRGFLEEAGLTLEGPVLDRAGHLYLLPEGLPTLLGLKA
PAPGLYLGKVQKGRFLPARALALAFGATLPWPEGLPRLALTPEDPRALAFATGEGVAWEG
EDHPLALVVLKTAAGEFPLDFGKAKRGVLRPVGVGL
Number of residues
456
Molecular Weight
49739.095
Theoretical pI
9.22
GO Classification
Functions
methyltransferase activity / RNA binding
Processes
rRNA processing
Components
cytoplasm
General Function
Rna binding
Specific Function
Specifically methylates the cytosines at positions 1400 (m5C1400), 1404 (m5C1404) and 1407 (m5C1407) of 16S rRNA. C1400, C1404 and C1407 are methylated in a 30S subunit substrate, but only C1400 and C1404 are methylated when naked 16S rRNA is the substrate. Methylation by RsmF may facilitate growth at temperatures outside the optimal growth temperature.
Pfam Domain Function
Transmembrane Regions
Not Available
Cellular Location
Cytoplasm
Gene sequence
>lcl|BSEQ0017300|Ribosomal RNA small subunit methyltransferase F (rsmF)
GTGCTGCCCAAGGCCTTCCTTTCCCGCATGGCCGAGCTTCTGGGCGAGGAGTTTCCCGCC
TTCCTCAAGGCCCTCACGGAGGGGAAGCGCACCTACGGCCTCCGGGTGAACACCCTGAAG
CTTCCCCCCGAGGCCTTTCAGAGGATCTCCCCCTGGCCCCTACGGCCCATTCCCTGGTGC
CAGGAGGGGTTTTACTACCCCGAGGAGGCCAGGCCCGGCCCCCACCCCTTCTTCTACGCC
GGGCTCTACTACATCCAGGAGCCGAGCGCCCAGGCGGTGGGGGTCCTCCTGGACCCGAAG
CCCGGGGAAAGGGTCTTGGACCTCGCGGCGGCCCCGGGGGGCAAGACCACCCACCTCGCC
GCCCGCATGGGGGGGAAGGGGCTTCTTTTGGCCAACGAGGTGGACGGCAAACGGGTGCGG
GGCCTTCTGGAGAACGTGGAGCGCTGGGGGGCCCCCCTCGCCGTGACCCAGGCCCCTCCC
AGGGCCCTGGCCGAGGCCTTCGGGACCTACTTCCACCGGGTCCTCCTGGACGCCCCCTGC
TCGGGGGAGGGGATGTTCCGCAAGGACAGGGAGGCCGCGCGCCACTGGGGGCCCTCGGCG
CCCAAGAGGATGGCGGAGGTGCAGAAGGCCCTCCTGGCCCAGGCCTCGAGGCTCCTGGGG
CCTGGGGGGGTGTTGGTCTACTCCACCTGCACCTTCGCCCCCGAGGAGAACGAGGGGGTG
GTGGCCCACTTCCTCAAGGCGCACCCGGAGTTCCGCCTCGAGGACGCCCGCCTCCACCCC
CTTTTCGCCCCGGGGGTGCCGGAGTGGGGGGAGGGGAACCCGGAGCTCCTTAAGACCGCG
AGGCTCTGGCCCCACCGCCTCGAGGGGGAGGGCCACTTCCTCGCCCGCTTCCGCAAGGAG
GGGGGGGCCTGGAGCACGCCGCGCCTGGAACGCCCTTCCCCCCTCTCCCAGGAGGCCCTG
CGGGCCTTTAGGGGCTTTTTGGAGGAGGCGGGGCTTACCTTGGAAGGCCCCGTCCTTGAC
CGGGCAGGCCACCTCTACCTCCTCCCCGAGGGGCTTCCCACCCTCTTGGGCCTCAAGGCC
CCTGCCCCGGGCCTCTACCTGGGCAAGGTGCAGAAGGGCCGCTTCCTCCCCGCGAGGGCC
CTCGCCCTCGCCTTCGGGGCCACCCTCCCTTGGCCCGAGGGGCTTCCCCGCCTCGCCCTT
ACCCCGGAAGACCCCAGGGCCCTGGCCTTCGCCACGGGGGAGGGGGTGGCCTGGGAGGGG
GAGGACCACCCCCTGGCCCTCGTGGTCCTGAAGACGGCGGCGGGGGAGTTCCCCCTGGAC
TTCGGCAAGGCCAAGCGCGGGGTGCTGAGGCCCGTGGGGGTGGGGCTTTGA
Chromosome Location
Not Available
Locus
Not Available
External Identifiers
ResourceLink
UniProtKB IDQ5SII2
UniProtKB Entry NameRSMF_THET8
GenBank Protein ID55771383
GenBank Gene IDAP008226
General References
  1. Demirci H, Larsen LH, Hansen T, Rasmussen A, Cadambi A, Gregory ST, Kirpekar F, Jogl G: Multi-site-specific 16S rRNA methyltransferase RsmF from Thermus thermophilus. RNA. 2010 Aug;16(8):1584-96. doi: 10.1261/rna.2088310. Epub 2010 Jun 17. [Article]

Drug Relations

Drug Relations
DrugBank IDNameDrug groupPharmacological action?ActionsDetails
DB02899N-CarboxymethionineexperimentalunknownDetails