Ribosomal RNA small subunit methyltransferase F
Details
- Name
- Ribosomal RNA small subunit methyltransferase F
- Kind
- protein
- Synonyms
- 2.1.1.-
- rRNA (cytosine-C(5)-)-methyltransferase RsmF
- Gene Name
- rsmF
- UniProtKB Entry
- Q5SII2Swiss-Prot
- Organism
- Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
- NCBI Taxonomy ID
- 300852
- Amino acid sequence
>lcl|BSEQ0017299|Ribosomal RNA small subunit methyltransferase F MLPKAFLSRMAELLGEEFPAFLKALTEGKRTYGLRVNTLKLPPEAFQRISPWPLRPIPWC QEGFYYPEEARPGPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLA ARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAPC SGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGV VAHFLKAHPEFRLEDARLHPLFAPGVPEWGEGNPELLKTARLWPHRLEGEGHFLARFRKE GGAWSTPRLERPSPLSQEALRAFRGFLEEAGLTLEGPVLDRAGHLYLLPEGLPTLLGLKA PAPGLYLGKVQKGRFLPARALALAFGATLPWPEGLPRLALTPEDPRALAFATGEGVAWEG EDHPLALVVLKTAAGEFPLDFGKAKRGVLRPVGVGL
- Number of residues
- 456
- Molecular Weight
- 49739.095
- Theoretical pI
- 9.22
- GO Classification
- Functionsmethyltransferase activity / RNA bindingProcessesrRNA processingComponentscytoplasm
- General Function
- Specifically methylates the cytosines at positions 1400 (m5C1400), 1404 (m5C1404) and 1407 (m5C1407) of 16S rRNA. C1400, C1404 and C1407 are methylated in a 30S subunit substrate, but only C1400 and C1404 are methylated when naked 16S rRNA is the substrate. Methylation by RsmF may facilitate growth at temperatures outside the optimal growth temperature.
- Specific Function
- RNA binding
- Pfam Domain Function
- RsmF_methylt_CI (PF17126)
- Signal Regions
- Not Available
- Transmembrane Regions
- Not Available
- Cellular Location
- Cytoplasm
- Gene sequence
>lcl|BSEQ0017300|Ribosomal RNA small subunit methyltransferase F (rsmF) GTGCTGCCCAAGGCCTTCCTTTCCCGCATGGCCGAGCTTCTGGGCGAGGAGTTTCCCGCC TTCCTCAAGGCCCTCACGGAGGGGAAGCGCACCTACGGCCTCCGGGTGAACACCCTGAAG CTTCCCCCCGAGGCCTTTCAGAGGATCTCCCCCTGGCCCCTACGGCCCATTCCCTGGTGC CAGGAGGGGTTTTACTACCCCGAGGAGGCCAGGCCCGGCCCCCACCCCTTCTTCTACGCC GGGCTCTACTACATCCAGGAGCCGAGCGCCCAGGCGGTGGGGGTCCTCCTGGACCCGAAG CCCGGGGAAAGGGTCTTGGACCTCGCGGCGGCCCCGGGGGGCAAGACCACCCACCTCGCC GCCCGCATGGGGGGGAAGGGGCTTCTTTTGGCCAACGAGGTGGACGGCAAACGGGTGCGG GGCCTTCTGGAGAACGTGGAGCGCTGGGGGGCCCCCCTCGCCGTGACCCAGGCCCCTCCC AGGGCCCTGGCCGAGGCCTTCGGGACCTACTTCCACCGGGTCCTCCTGGACGCCCCCTGC TCGGGGGAGGGGATGTTCCGCAAGGACAGGGAGGCCGCGCGCCACTGGGGGCCCTCGGCG CCCAAGAGGATGGCGGAGGTGCAGAAGGCCCTCCTGGCCCAGGCCTCGAGGCTCCTGGGG CCTGGGGGGGTGTTGGTCTACTCCACCTGCACCTTCGCCCCCGAGGAGAACGAGGGGGTG GTGGCCCACTTCCTCAAGGCGCACCCGGAGTTCCGCCTCGAGGACGCCCGCCTCCACCCC CTTTTCGCCCCGGGGGTGCCGGAGTGGGGGGAGGGGAACCCGGAGCTCCTTAAGACCGCG AGGCTCTGGCCCCACCGCCTCGAGGGGGAGGGCCACTTCCTCGCCCGCTTCCGCAAGGAG GGGGGGGCCTGGAGCACGCCGCGCCTGGAACGCCCTTCCCCCCTCTCCCAGGAGGCCCTG CGGGCCTTTAGGGGCTTTTTGGAGGAGGCGGGGCTTACCTTGGAAGGCCCCGTCCTTGAC CGGGCAGGCCACCTCTACCTCCTCCCCGAGGGGCTTCCCACCCTCTTGGGCCTCAAGGCC CCTGCCCCGGGCCTCTACCTGGGCAAGGTGCAGAAGGGCCGCTTCCTCCCCGCGAGGGCC CTCGCCCTCGCCTTCGGGGCCACCCTCCCTTGGCCCGAGGGGCTTCCCCGCCTCGCCCTT ACCCCGGAAGACCCCAGGGCCCTGGCCTTCGCCACGGGGGAGGGGGTGGCCTGGGAGGGG GAGGACCACCCCCTGGCCCTCGTGGTCCTGAAGACGGCGGCGGGGGAGTTCCCCCTGGAC TTCGGCAAGGCCAAGCGCGGGGTGCTGAGGCCCGTGGGGGTGGGGCTTTGA
- Chromosome Location
- Not Available
- Locus
- Not Available
- External Identifiers
Resource Link UniProtKB ID Q5SII2 UniProtKB Entry Name RSMF_THET8 GenBank Protein ID 55771383 GenBank Gene ID AP008226 PDB ID(s) 3M6U, 3M6V, 3M6W, 3M6X KEGG ID ttj:TTHA1387 NCBI Gene ID 3168094 - General References
- Demirci H, Larsen LH, Hansen T, Rasmussen A, Cadambi A, Gregory ST, Kirpekar F, Jogl G: Multi-site-specific 16S rRNA methyltransferase RsmF from Thermus thermophilus. RNA. 2010 Aug;16(8):1584-96. doi: 10.1261/rna.2088310. Epub 2010 Jun 17. [Article]
Associated Data
- Drug Relations
Drug Drug group Pharmacological action? Type Actions Details N-Carboxymethionine experimental unknown target Details