NAV

Ribose-5-phosphate

Identification

Generic Name
Ribose-5-phosphate
DrugBank Accession Number
DB02053
Background

Not Available

Type
Small Molecule
Groups
Experimental
Structure
3D
Similar Structures
Weight
Average: 230.1098
Monoisotopic: 230.01915384
Chemical Formula
C5H11O8P
Synonyms
  • 5-O-phosphono-D-ribose
  • aldehydo-D-ribose 5-phosphate
  • D-Ribose 5-phosphate
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Pharmacology

Indication

Not Available

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Contraindications & Blackbox Warnings
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Pharmacodynamics

Not Available

Mechanism of action
TargetActionsOrganism
URibose-5-phosphate isomerase ANot AvailableThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
U2-dehydro-3-deoxyphosphooctonate aldolaseNot AvailableAquifex aeolicus (strain VF5)
UADP-ribose pyrophosphataseNot AvailableThermus thermophilus
Absorption

Not Available

Volume of distribution

Not Available

Protein binding

Not Available

Metabolism
Not Available
Route of elimination

Not Available

Half-life

Not Available

Clearance

Not Available

Adverse Effects
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Toxicity

Not Available

Pathways
Not Available
Pharmacogenomic Effects/ADRs
Not Available

Interactions

Drug Interactions
This information should not be interpreted without the help of a healthcare provider. If you believe you are experiencing an interaction, contact a healthcare provider immediately. The absence of an interaction does not necessarily mean no interactions exist.
Not Available
Food Interactions
Not Available

Categories

Drug Categories
Chemical TaxonomyProvided by Classyfire
Description
This compound belongs to the class of organic compounds known as pentose phosphates. These are carbohydrate derivatives containing a pentose substituted by one or more phosphate groups.
Kingdom
Organic compounds
Super Class
Organic oxygen compounds
Class
Organooxygen compounds
Sub Class
Carbohydrates and carbohydrate conjugates
Direct Parent
Pentose phosphates
Alternative Parents
Monosaccharide phosphates / Monoalkyl phosphates / Beta-hydroxy aldehydes / Alpha-hydroxyaldehydes / Secondary alcohols / Polyols / Organic oxides / Hydrocarbon derivatives
Substituents
Alcohol / Aldehyde / Aliphatic acyclic compound / Alkyl phosphate / Alpha-hydroxyaldehyde / Beta-hydroxy aldehyde / Carbonyl group / Hydrocarbon derivative / Monoalkyl phosphate / Monosaccharide phosphate
Molecular Framework
Aliphatic acyclic compounds
External Descriptors
D-ribose 5-phosphate (CHEBI:17797)
Affected organisms
Not Available

Chemical Identifiers

UNII
4B2428FLTO
CAS number
4151-19-3
InChI Key
PPQRONHOSHZGFQ-LMVFSUKVSA-N
InChI
InChI=1S/C5H11O8P/c6-1-3(7)5(9)4(8)2-13-14(10,11)12/h1,3-5,7-9H,2H2,(H2,10,11,12)/t3-,4+,5-/m0/s1
IUPAC Name
{[(2R,3R,4R)-2,3,4-trihydroxy-5-oxopentyl]oxy}phosphonic acid
SMILES
[H][C@@](O)(COP(O)(O)=O)[C@@]([H])(O)[C@@]([H])(O)C=O

References

General References
Not Available
KEGG Compound
C00117
PubChem Compound
77982
PubChem Substance
46507722
ChemSpider
70368
ChEBI
17797
ZINC
ZINC000022116391
PDBe Ligand
R52
Wikipedia
Ribose_5-phosphate
PDB Entries
1jcy / 1u9z / 1v8t / 1zha / 1zji / 2r5n / 2vvp / 3hee / 3m6l / 3uw1 …
show 7 more

Clinical Trials

Clinical Trials
PhaseStatusPurposeConditionsCount

Pharmacoeconomics

Manufacturers
Not Available
Packagers
Not Available
Dosage Forms
Not Available
Prices
Not Available
Patents
Not Available

Properties

State
Solid
Experimental Properties
Not Available
Predicted Properties
PropertyValueSource
Water Solubility19.3 mg/mLALOGPS
logP-1.6ALOGPS
logP-3.1Chemaxon
logS-1.1ALOGPS
pKa (Strongest Acidic)1.49Chemaxon
pKa (Strongest Basic)-3.5Chemaxon
Physiological Charge-2Chemaxon
Hydrogen Acceptor Count7Chemaxon
Hydrogen Donor Count5Chemaxon
Polar Surface Area144.52 Å2Chemaxon
Rotatable Bond Count6Chemaxon
Refractivity42.26 m3·mol-1Chemaxon
Polarizability17.78 Å3Chemaxon
Number of Rings0Chemaxon
Bioavailability1Chemaxon
Rule of FiveYesChemaxon
Ghose FilterNoChemaxon
Veber's RuleNoChemaxon
MDDR-like RuleNoChemaxon
Predicted ADMET Features
Not Available

Spectra

Mass Spec (NIST)
Not Available
Spectra
SpectrumSpectrum TypeSplash Key
GC-MS Spectrum - GC-MS (5 TMS)GC-MSsplash10-014i-1974000000-7f35421260bc9989530d
GC-MS Spectrum - GC-MS (5 TMS)GC-MSsplash10-014i-1975000000-858140fffa5338bc572e
Predicted GC-MS Spectrum - GC-MSPredicted GC-MSsplash10-01ot-9610000000-071fe29dfef7d3466a18
GC-MS Spectrum - GC-EI-TOFGC-MSsplash10-014j-1932000000-ae42219f726995a7e3d5
GC-MS Spectrum - GC-EI-TOFGC-MSsplash10-00kb-1932000000-48e9a0c4919c013906fb
Predicted MS/MS Spectrum - 10V, Positive (Annotated)Predicted LC-MS/MSsplash10-0002-9110000000-3610663444897f02514d
Predicted MS/MS Spectrum - 10V, Negative (Annotated)Predicted LC-MS/MSsplash10-002b-9000000000-d18b9935fb0239e471fb
Predicted MS/MS Spectrum - 20V, Positive (Annotated)Predicted LC-MS/MSsplash10-0002-9100000000-817fa7f068870f720063
Predicted MS/MS Spectrum - 20V, Negative (Annotated)Predicted LC-MS/MSsplash10-004i-9000000000-f06c76fd42524853c864
Predicted MS/MS Spectrum - 40V, Positive (Annotated)Predicted LC-MS/MSsplash10-000t-9000000000-23e6d3fd916509c65552
Predicted MS/MS Spectrum - 40V, Negative (Annotated)Predicted LC-MS/MSsplash10-004i-9000000000-95587ca9420bb0f5d514
Predicted 1H NMR Spectrum1D NMRNot Applicable
Predicted 13C NMR Spectrum1D NMRNot Applicable
Chromatographic Properties
Collision Cross Sections (CCS)
AdductCCS Value (Å2)Source typeSource
[M-H]-134.89224
predicted
DeepCCS 1.0 (2019)
[M+H]+137.28781
predicted
DeepCCS 1.0 (2019)
[M+Na]+144.53273
predicted
DeepCCS 1.0 (2019)

Targets

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Details1. Ribose-5-phosphate isomerase A
Kind
Protein
Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Pharmacological action
Unknown
General Function
Ribose-5-phosphate isomerase activity
Specific Function
Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
Gene Name
rpiA
Uniprot ID
Q5SIR5
Uniprot Name
Ribose-5-phosphate isomerase A
Molecular Weight
24066.72 Da
References
  1. Overington JP, Al-Lazikani B, Hopkins AL: How many drug targets are there? Nat Rev Drug Discov. 2006 Dec;5(12):993-6. [Article]
  2. Imming P, Sinning C, Meyer A: Drugs, their targets and the nature and number of drug targets. Nat Rev Drug Discov. 2006 Oct;5(10):821-34. [Article]
Details2. 2-dehydro-3-deoxyphosphooctonate aldolase
Kind
Protein
Organism
Aquifex aeolicus (strain VF5)
Pharmacological action
Unknown
General Function
3-deoxy-8-phosphooctulonate synthase activity
Specific Function
Not Available
Gene Name
kdsA
Uniprot ID
O66496
Uniprot Name
2-dehydro-3-deoxyphosphooctonate aldolase
Molecular Weight
29734.17 Da
References
  1. Overington JP, Al-Lazikani B, Hopkins AL: How many drug targets are there? Nat Rev Drug Discov. 2006 Dec;5(12):993-6. [Article]
  2. Imming P, Sinning C, Meyer A: Drugs, their targets and the nature and number of drug targets. Nat Rev Drug Discov. 2006 Oct;5(10):821-34. [Article]
Details3. ADP-ribose pyrophosphatase
Kind
Protein
Organism
Thermus thermophilus
Pharmacological action
Unknown
General Function
Nucleotide binding
Specific Function
Not Available
Gene Name
ndx4
Uniprot ID
Q84CU3
Uniprot Name
ADP-ribose pyrophosphatase
Molecular Weight
19263.785 Da

Drug created at June 13, 2005 13:24 / Updated at June 12, 2020 16:52