6-Methylamino-5-Nitroisocytosine

Identification

Generic Name
6-Methylamino-5-Nitroisocytosine
DrugBank Accession Number
DB03705
Background

Not Available

Type
Small Molecule
Groups
Experimental
Structure
Weight
Average: 185.1408
Monoisotopic: 185.054889115
Chemical Formula
C5H7N5O3
Synonyms
Not Available

Pharmacology

Indication

Not Available

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Pharmacodynamics

Not Available

Mechanism of action
TargetActionsOrganism
ADihydropteroate synthase
inhibitor
Escherichia coli (strain K12)
UDihydropteroate synthaseNot AvailableBacillus anthracis
Absorption

Not Available

Volume of distribution

Not Available

Protein binding

Not Available

Metabolism
Not Available
Route of elimination

Not Available

Half-life

Not Available

Clearance

Not Available

Adverse Effects
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Toxicity

Not Available

Pathways
Not Available
Pharmacogenomic Effects/ADRs
Not Available

Interactions

Drug Interactions
This information should not be interpreted without the help of a healthcare provider. If you believe you are experiencing an interaction, contact a healthcare provider immediately. The absence of an interaction does not necessarily mean no interactions exist.
Not Available
Food Interactions
Not Available

Categories

Drug Categories
Not Available
Chemical TaxonomyProvided by Classyfire
Description
This compound belongs to the class of organic compounds known as nitroaromatic compounds. These are c-nitro compounds where the nitro group is C-substituted with an aromatic group.
Kingdom
Organic compounds
Super Class
Organic 1,3-dipolar compounds
Class
Allyl-type 1,3-dipolar organic compounds
Sub Class
Organic nitro compounds
Direct Parent
Nitroaromatic compounds
Alternative Parents
Secondary alkylarylamines / Pyrimidones / Aminopyrimidines and derivatives / Hydropyrimidines / Vinylogous amides / Heteroaromatic compounds / Propargyl-type 1,3-dipolar organic compounds / Organic oxoazanium compounds / Azacyclic compounds / Primary amines
show 5 more
Substituents
Amine / Aminopyrimidine / Aromatic heteromonocyclic compound / Azacycle / Heteroaromatic compound / Hydrocarbon derivative / Hydropyrimidine / Nitroaromatic compound / Organic nitrogen compound / Organic oxide
show 14 more
Molecular Framework
Aromatic heteromonocyclic compounds
External Descriptors
Not Available
Affected organisms
Not Available

Chemical Identifiers

UNII
Not Available
CAS number
Not Available
InChI Key
NMCMUSAXKISTKW-UHFFFAOYSA-N
InChI
InChI=1S/C5H7N5O3/c1-7-3-2(10(12)13)4(11)9-5(6)8-3/h1H3,(H4,6,7,8,9,11)
IUPAC Name
2-amino-6-(methylamino)-5-nitro-3,4-dihydropyrimidin-4-one
SMILES
CNC1=C(C(=O)NC(N)=N1)[N+]([O-])=O

References

General References
Not Available
PubChem Compound
448810
PubChem Substance
46508897
ChemSpider
395497
BindingDB
18068
ChEMBL
CHEMBL56190
ZINC
ZINC000018086542
PDBe Ligand
680
PDB Entries
1tx2

Clinical Trials

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PhaseStatusPurposeConditionsCountStart DateWhy Stopped100+ additional columns

Pharmacoeconomics

Manufacturers
Not Available
Packagers
Not Available
Dosage Forms
Not Available
Prices
Not Available
Patents
Not Available

Properties

State
Solid
Experimental Properties
Not Available
Predicted Properties
PropertyValueSource
Water Solubility2.27 mg/mLALOGPS
logP-0.77ALOGPS
logP-1.1Chemaxon
logS-1.9ALOGPS
pKa (Strongest Acidic)7.26Chemaxon
pKa (Strongest Basic)-2.8Chemaxon
Physiological Charge-1Chemaxon
Hydrogen Acceptor Count6Chemaxon
Hydrogen Donor Count3Chemaxon
Polar Surface Area122.65 Å2Chemaxon
Rotatable Bond Count2Chemaxon
Refractivity51.15 m3·mol-1Chemaxon
Polarizability15.78 Å3Chemaxon
Number of Rings1Chemaxon
Bioavailability1Chemaxon
Rule of FiveYesChemaxon
Ghose FilterNoChemaxon
Veber's RuleNoChemaxon
MDDR-like RuleNoChemaxon
Predicted ADMET Features
PropertyValueProbability
Human Intestinal Absorption+0.9703
Blood Brain Barrier+0.7926
Caco-2 permeable-0.5531
P-glycoprotein substrateNon-substrate0.6319
P-glycoprotein inhibitor INon-inhibitor0.9487
P-glycoprotein inhibitor IINon-inhibitor0.9956
Renal organic cation transporterNon-inhibitor0.9326
CYP450 2C9 substrateNon-substrate0.7975
CYP450 2D6 substrateNon-substrate0.8488
CYP450 3A4 substrateNon-substrate0.6432
CYP450 1A2 substrateNon-inhibitor0.6882
CYP450 2C9 inhibitorNon-inhibitor0.7875
CYP450 2D6 inhibitorNon-inhibitor0.9338
CYP450 2C19 inhibitorNon-inhibitor0.8962
CYP450 3A4 inhibitorNon-inhibitor0.8995
CYP450 inhibitory promiscuityLow CYP Inhibitory Promiscuity0.9866
Ames testAMES toxic0.8076
CarcinogenicityNon-carcinogens0.8699
BiodegradationNot ready biodegradable0.9272
Rat acute toxicity2.2941 LD50, mol/kg Not applicable
hERG inhibition (predictor I)Weak inhibitor0.905
hERG inhibition (predictor II)Non-inhibitor0.9095
ADMET data is predicted using admetSAR, a free tool for evaluating chemical ADMET properties. (23092397)

Spectra

Mass Spec (NIST)
Not Available
Spectra
SpectrumSpectrum TypeSplash Key
Predicted GC-MS Spectrum - GC-MSPredicted GC-MSsplash10-00kr-5900000000-0982aabb48a9fc4697c5
Predicted 1H NMR Spectrum1D NMRNot Applicable
Predicted 13C NMR Spectrum1D NMRNot Applicable
Chromatographic Properties
Collision Cross Sections (CCS)
AdductCCS Value (Å2)Source typeSource
[M-H]-129.50252
predicted
DeepCCS 1.0 (2019)
[M+H]+132.76256
predicted
DeepCCS 1.0 (2019)
[M+Na]+141.06699
predicted
DeepCCS 1.0 (2019)

Targets

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Kind
Protein
Organism
Escherichia coli (strain K12)
Pharmacological action
Yes
Actions
Inhibitor
General Function
Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives.
Specific Function
dihydropteroate synthase activity
Gene Name
folP
Uniprot ID
P0AC13
Uniprot Name
Dihydropteroate synthase
Molecular Weight
30614.855 Da
References
  1. Zhou Y, Zhang Y, Zhao D, Yu X, Shen X, Zhou Y, Wang S, Qiu Y, Chen Y, Zhu F: TTD: Therapeutic Target Database describing target druggability information. Nucleic Acids Res. 2024 Jan 5;52(D1):D1465-D1477. doi: 10.1093/nar/gkad751. [Article]
Kind
Protein
Organism
Bacillus anthracis
Pharmacological action
Unknown
General Function
Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives.
Specific Function
dihydropteroate synthase activity
Gene Name
folP
Uniprot ID
Q81VW8
Uniprot Name
Dihydropteroate synthase
Molecular Weight
30975.455 Da

Drug created at June 13, 2005 13:24 / Updated at August 26, 2024 19:22