Alginate lyase
Details
- Name
- Alginate lyase
- Synonyms
- Not Available
- Gene Name
- aly
- Organism
- Sphingomonas sp.
- Amino acid sequence
>lcl|BSEQ0022074|Alginate lyase MPLACLATTRVGAAREKSGDSSMFDIPFPGHGRRLAVAALAFAGCAFAGSLQAHPFDQAV VKDPTASYVDVKARRTFLQSGQLDDRLKAALPKEYDCTTEATPNPQQGEMVIPRRYLSGN HGPVNPDYEPVVTLYRDFEKISATLGNLYVATGKPVYATCLLNMLDKWAKADALLNYDPK SQSWYQVEWSAATAAFALSTMMAEPNVDTAQRERVVKWLNRVARHQTSFPGGDTSCCNNH SYWRGQEATIIGVISKDDELFRWGLGRYVQAMGLINEDGSFVHEMTRHEQSLHYQNYAML PLTMIAETASRQGIDLYAYKENGRDIHSARKFVFAAVKNPDLIKKYASEPQDTRAFKPGR GDLNWIEYQRARFGFADELGFMTVPIFDPRTGGSGTLLAYKPQGAAAQAPVSAPAAAHSS IDLSKWKLQIPVDPIDVATRDLLKGYQDKYFYVDKDGSLAFWCPASGFKTTANTKYPRSE LREMLDPDNHAVNWGWQGTHEMNLRGAVMHVSPSGKTIVMQIHAVMPDGSNAPPLVKGQF YKNTLDFLVKNSAAGGKDTHYVFEGIELGKPYDAQIKVVDGVLSMTVNGQTKTVDFVAKD AGWKDLKFYFKAGNYLQDRQADGSDTSALVKLYKLDVKHSS
- Number of residues
- 641
- Molecular Weight
- 71002.88
- Theoretical pI
- 8.06
- GO Classification
- Functionslyase activityComponentsperiplasmic space
- General Function
- Lyase activity
- Specific Function
- Not Available
- Pfam Domain Function
- Transmembrane Regions
- Not Available
- Cellular Location
- Not Available
- Gene sequence
>lcl|BSEQ0006488|1926 bp TCAGCTCGAGTGCTTTACGTCGAGCTTGTACAACTTGACCAGCGCGCTGGTGTCCGACCC GTCAGCCTGGCGGTCCTGCAAGTAATTGCCCGCCTTGAAATAGAACTTCAGGTCTTTCCA GCCGGCGTCCTTGGCGACGAAATCGACGGTCTTGGTCTGCCCGTTGACCGTCATCGACAA CACACCGTCCACCACTTTGATCTGCGCATCGTACGGCTTGCCCAGTTCGATGCCTTCGAA CACGTAGTGCGTGTCCTTGCCGCCAGCGGCCGAGTTCTTCACAAGAAAATCCAGCGTGTT CTTGTAGAACTGCCCCTTGACCAGCGGCGGCGCATTCGAGCCATCGGGCATGACGGCATG AATCTGCATGACAATGGTCTTGCCACTGGGCGACACGTGCATCACCGCTCCGCGCAGATT CATTTCGTGGGTGCCTTGCCAGCCCCAATTCACCGCGTGGTTGTCGGGATCGAGCATTTC GCGCAGCTCGCTGCGCGGGTACTTCGTGTTGGCCGTCGTCTTGAAACCGCTGGCCGGACA CCAGAAGGCAAGCGAGCCATCCTTGTCGACGTAGAAGTACTTGTCCTGATAACCCTTGAG CAGATCACGCGTGGCGACATCGATCGGGTCGACCGGAATCTGCAGCTTCCACTTCGACAG GTCGATCGACGAATGCGCCGCTGCCGGGGCGGACACCGGCGCCTGCGCTGCCGCGCCTTG CGGTTTGTACGCCAGCAAAGTGCCCGAACCACCGGTACGCGGATCGAAGATCGGCACCGT CATGAAGCCCAGCTCATCGGCAAAACCAAAGCGCGCGCGCTGGTATTCGATCCAGTTCAG GTCGCCCCGCCCCGGCTTGAAGGCACGCGTATCCTGCGGCTCGGAAGCGTACTTCTTGAT GAGGTCCGGGTTCTTCACCGCAGCAAAGACAAACTTGCGCGCTGAGTGAATATCGCGACC GTTCTCTTTGTACGCGTACAGATCGATACCCTGACGTGATGCCGTTTCGGCAATCATCGT CAGCGGCAGCATGGCGTAGTTCTGATAGTGCAAGGACTGTTCGTGACGCGTCATTTCATG CACGAAGCTGCCGTCTTCATTGATCAGCCCCATCGCCTGCACATAACGGCCCAGCCCCCA ACGGAAGAGTTCATCGTCCTTGCTGATCACGCCGATGATGGTCGCTTCCTGACCGCGCCA ATACGAGTGATTGTTGCAGCAACTCGTGTCGCCCCCCGGAAAGCTCGTCTGATGGCGCGC CACACGGTTGAGCCACTTCACCACACGCTCGCGCTGGGCTGTGTCGACGTTCGGCTCGGC CATCATCGTCGACAGGGCAAAGGCGGCGGTCGCCGCCGACCATTCGACTTGGTACCACGA CTGCGACTTGGGGTCGTAGTTGAGCAACGCGTCGGCCTTGGCCCACTTGTCCAGCATGTT CAGCAGACAAGTGGCGTACACCGGCTTGCCCGTCGCAACGTAGAGATTTCCAAGCGTGGC GGAAATTTTCTCGAAATCACGATAAAGCGTCACCACCGGTTCGTAGTCCGGATTCACCGG GCCGTGATTGCCGGAAAGATAACGGCGCGGAATGACCATCTCGCCTTGCTGCGGGTTAGG CGTTGCCTCGGTCGTGCAGTCGTACTCCTTGGGCAGCGCTGCCTTGAGGCGGTCATCGAG CTGCCCGCTCTGCAAGAAGGTACGACGCGCCTTGACGTCGACATACGAGGCCGTGGGGTC TTTCACGACGGCCTGGTCGAAGGGGTGTGCCTGCAGGCTGCCCGCGAAGGCACAACCTGC GAACGCAAGCGCGGCGACGGCCAGACGACGGCCATGCCCCGGGAACGGGATGTCAAACAT CGAACTGTCTCCAGATTTTTCGCGCGCAGCCCCCACGCGCGTCGTTGCAAGGCATGCCAA AGGCAT
- Chromosome Location
- Not Available
- Locus
- Not Available
- External Identifiers
Resource Link UniProtKB ID Q9KWU1 UniProtKB Entry Name Q9KWU1_SPHSX GenBank Gene ID AB011415 - General References
- Yoon HJ, Mikami B, Hashimoto W, Murata K: Crystal structure of alginate lyase A1-III from Sphingomonas species A1 at 1.78 A resolution. J Mol Biol. 1999 Jul 9;290(2):505-14. [Article]
- Yoon HJ, Hashimoto W, Miyake O, Murata K, Mikami B: Crystal structure of alginate lyase A1-III complexed with trisaccharide product at 2.0 A resolution. J Mol Biol. 2001 Mar 16;307(1):9-16. [Article]
- Mikami B, Ban M, Suzuki S, Yoon HJ, Miyake O, Yamasaki M, Ogura K, Maruyama Y, Hashimoto W, Murata K: Induced-fit motion of a lid loop involved in catalysis in alginate lyase A1-III. Acta Crystallogr D Biol Crystallogr. 2012 Sep;68(Pt 9):1207-16. doi: 10.1107/S090744491202495X. Epub 2012 Aug 18. [Article]