Metabolite Gemcitabine diphosphate

Name
Gemcitabine diphosphate
Description
Not Available
Structure
Synonyms
Not Available
UNII
6FIZ684IIK
CAS number
Not Available
Weight
Average: 423.158
Monoisotopic: 423.004423085
Chemical Formula
C9H13F2N3O10P2
InChI Key
FRQISCZGNNXEMD-QPPQHZFASA-N
InChI
InChI=1S/C9H13F2N3O10P2/c10-9(11)6(15)4(3-22-26(20,21)24-25(17,18)19)23-7(9)14-2-1-5(12)13-8(14)16/h1-2,4,6-7,15H,3H2,(H,20,21)(H2,12,13,16)(H2,17,18,19)/t4-,6-,7-/m1/s1
IUPAC Name
[({[(2R,3R,5R)-5-(4-amino-2-oxo-1,2-dihydropyrimidin-1-yl)-4,4-difluoro-3-hydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]phosphonic acid
SMILES
NC1=NC(=O)N(C=C1)[C@@H]1O[C@H](COP(O)(=O)OP(O)(O)=O)[C@@H](O)C1(F)F
Reactions
Spectra
SpectrumSpectrum TypeSplash Key
Predicted GC-MS Spectrum - GC-MSPredicted GC-MSsplash10-004i-9822000000-398b68b48bd8b607ab48
Predicted MS/MS Spectrum - 10V, Positive (Annotated)Predicted LC-MS/MSsplash10-00di-0000900000-3f2bfc1ce961a09dd648
Predicted MS/MS Spectrum - 10V, Negative (Annotated)Predicted LC-MS/MSsplash10-05i0-0304900000-f0c03ab49b301961b4ab
Predicted MS/MS Spectrum - 20V, Positive (Annotated)Predicted LC-MS/MSsplash10-03di-0900000000-d9b951c2e42d622be7c2
Predicted MS/MS Spectrum - 20V, Negative (Annotated)Predicted LC-MS/MSsplash10-004i-9203100000-170ed8bc0d25899540fe
Predicted MS/MS Spectrum - 40V, Positive (Annotated)Predicted LC-MS/MSsplash10-0002-9211000000-e846db01a421fbf464bd
Predicted MS/MS Spectrum - 40V, Negative (Annotated)Predicted LC-MS/MSsplash10-004i-9000000000-0319891f161746843aea
Chromatographic Properties
Collision Cross Sections (CCS)
AdductCCS Value (Å2)Source typeSource
[M-H]-198.962869
predicted
DarkChem Lite v0.1.0
[M-H]-171.38722
predicted
DeepCCS 1.0 (2019)
[M+H]+199.335169
predicted
DarkChem Lite v0.1.0
[M+H]+173.78278
predicted
DeepCCS 1.0 (2019)
[M+Na]+199.401869
predicted
DarkChem Lite v0.1.0
[M+Na]+181.07077
predicted
DeepCCS 1.0 (2019)
Human Metabolome Database
HMDB0060639
ChemSpider
4925716
PDBe Ligand
GCQ
Predicted Properties
PropertyValueSource
Water Solubility14.1 mg/mLALOGPS
logP-0.13ALOGPS
logP-2.2Chemaxon
logS-1.5ALOGPS
pKa (Strongest Acidic)1.74Chemaxon
pKa (Strongest Basic)3.96Chemaxon
Physiological Charge-3Chemaxon
Hydrogen Acceptor Count10Chemaxon
Hydrogen Donor Count5Chemaxon
Polar Surface Area201.44 Å2Chemaxon
Rotatable Bond Count6Chemaxon
Refractivity75 m3·mol-1Chemaxon
Polarizability30.78 Å3Chemaxon
Number of Rings2Chemaxon
Bioavailability1Chemaxon
Rule of FiveYesChemaxon
Ghose FilterNoChemaxon
Veber's RuleNoChemaxon
MDDR-like RuleNoChemaxon