The DNA sequence and analysis of human chromosome 14.
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Heilig R, Eckenberg R, Petit JL, Fonknechten N, Da Silva C, Cattolico L, Levy M, Barbe V, de Berardinis V, Ureta-Vidal A, Pelletier E, Vico V, Anthouard V, Rowen L, Madan A, Qin S, Sun H, Du H, Pepin K, Artiguenave F, Robert C, Cruaud C, Bruls T, Jaillon O, Friedlander L, Samson G, Brottier P, Cure S, Segurens B, Aniere F, Samain S, Crespeau H, Abbasi N, Aiach N, Boscus D, Dickhoff R, Dors M, Dubois I, Friedman C, Gouyvenoux M, James R, Madan A, Mairey-Estrada B, Mangenot S, Martins N, Menard M, Oztas S, Ratcliffe A, Shaffer T, Trask B, Vacherie B, Bellemere C, Belser C, Besnard-Gonnet M, Bartol-Mavel D, Boutard M, Briez-Silla S, Combette S, Dufosse-Laurent V, Ferron C, Lechaplais C, Louesse C, Muselet D, Magdelenat G, Pateau E, Petit E, Sirvain-Trukniewicz P, Trybou A, Vega-Czarny N, Bataille E, Bluet E, Bordelais I, Dubois M, Dumont C, Guerin T, Haffray S, Hammadi R, Muanga J, Pellouin V, Robert D, Wunderle E, Gauguet G, Roy A, Sainte-Marthe L, Verdier J, Verdier-Discala C, Hillier L, Fulton L, McPherson J, Matsuda F, Wilson R, Scarpelli C, Gyapay G, Wincker P, Saurin W, Quetier F, Waterston R, Hood L, Weissenbach J
The DNA sequence and analysis of human chromosome 14.
Nature. 2003 Feb 6;421(6923):601-7. Epub 2003 Jan 1.
- PubMed ID
- 12508121 [ View in PubMed]
- Abstract
Chromosome 14 is one of five acrocentric chromosomes in the human genome. These chromosomes are characterized by a heterochromatic short arm that contains essentially ribosomal RNA genes, and a euchromatic long arm in which most, if not all, of the protein-coding genes are located. The finished sequence of human chromosome 14 comprises 87,410,661 base pairs, representing 100% of its euchromatic portion, in a single continuous segment covering the entire long arm with no gaps. Two loci of crucial importance for the immune system, as well as more than 60 disease genes, have been localized so far on chromosome 14. We identified 1,050 genes and gene fragments, and 393 pseudogenes. On the basis of comparisons with other vertebrate genomes, we estimate that more than 96% of the chromosome 14 genes have been annotated. From an analysis of the CpG island occurrences, we estimate that 70% of these annotated genes are complete at their 5' end.
DrugBank Data that Cites this Article
- Polypeptides
Name UniProt ID Glycogen phosphorylase, liver form P06737 Details Dehydrogenase/reductase SDR family member 4 Q9BTZ2 Details Mitochondrial basic amino acids transporter Q8N8R3 Details Tryptophan--tRNA ligase, cytoplasmic P23381 Details Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial Q02252 Details Prostaglandin D2 receptor Q13258 Details NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 O75438 Details Protein amnionless Q9BXJ7 Details Calmodulin P0DP23 Details RAC-alpha serine/threonine-protein kinase P31749 Details Thyrotropin receptor P16473 Details C-1-tetrahydrofolate synthase, cytoplasmic P11586 Details Serine palmitoyltransferase 2 O15270 Details Retinol dehydrogenase 12 Q96NR8 Details Large neutral amino acids transporter small subunit 2 Q9UHI5 Details Estrogen receptor beta Q92731 Details Glutathione peroxidase 2 P18283 Details Maleylacetoacetate isomerase O43708 Details Eosinophil cationic protein P12724 Details Chymase P23946 Details Heat shock protein HSP 90-alpha P07900 Details Proto-oncogene c-Fos P01100 Details Galectin-3 P17931 Details Plasma serine protease inhibitor P05154 Details Protein-glutamine gamma-glutamyltransferase K P22735 Details Retinol dehydrogenase 11 Q8TC12 Details Trans-3-hydroxy-L-proline dehydratase Q96EM0 Details Proteasome subunit beta type-5 P28074 Details Protein farnesyltransferase subunit beta P49356 Details Hypoxia-inducible factor 1-alpha Q16665 Details DNA-(apurinic or apyrimidinic site) lyase P27695 Details Placenta growth factor P49763 Details Bcl-2-like protein 2 Q92843 Details NF-kappa-B inhibitor alpha P25963 Details Leukotriene B4 receptor 2 Q9NPC1 Details DNA polymerase epsilon subunit 2 P56282 Details Matrix metalloproteinase-14 P50281 Details Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform Q13362 Details Ig gamma-2 chain C region P01859 Details Proteasome subunit alpha type-6 P60900 Details Putative dehydrogenase/reductase SDR family member 4-like 1 P0CG22 Details Ig heavy chain V-III region 23 P01764 Details Immunoglobulin heavy variable 1-2 P23083 Details Immunoglobulin heavy variable 3-30 P01768 Details Transforming growth factor beta-3 P10600 Details Ig alpha-2 chain C region P01877 Details Jun dimerization protein 2 Q8WYK2 Details Steroid hormone receptor ERR2 O95718 Details Ig gamma-4 chain C region P01861 Details C-type lectin domain family 14 member A Q86T13 Details Mitochondrial 2-oxodicarboxylate carrier Q9BQT8 Details Alpha-actinin-1 P12814 Details Proteasome activator complex subunit 1 Q06323 Details Thyroxine 5-deiodinase P55073 Details Cyclin-dependent kinase-like 1 Q00532 Details Mitogen-activated protein kinase kinase kinase kinase 5 Q9Y4K4 Details MAP/microtubule affinity-regulating kinase 3 P27448 Details Serine/threonine-protein kinase Nek9 Q8TD19 Details Serine/threonine-protein kinase D1 Q15139 Details Phosphoenolpyruvate carboxykinase [GTP], mitochondrial Q16822 Details 60 kDa lysophospholipase Q86U10 Details Potassium voltage-gated channel subfamily H member 5 Q8NCM2 Details Type II iodothyronine deiodinase Q92813 Details Ectonucleoside triphosphate diphosphohydrolase 5 O75356 Details Thiamine-triphosphatase Q9BU02 Details Zinc transporter ZIP2 Q9NP94 Details Zinc transporter ZIP9 Q9NUM3 Details Immunoglobulin heavy constant gamma 3 P01860 Details Immunoglobulin heavy constant epsilon P01854 Details Adenylate cyclase type 4 Q8NFM4 Details